Basic Information
VIS ID
TVIS30013910
Fusion event
HIV-TBCD integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
80729156/82771280 (Hg38)
End
80729156/82771280 (Hg38)
Orient
-
Location type
Intronic
Target gene
TBCD
miRNAs that regulate target gene
hsa-mir-1-3p
Nearest miRNA
hsa-mir-10226/Upstream/102973;
Nearest TSS
ENST00000595228/Upstream/19122; ENST00000572984/Downstream/24815;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/18313, chr17-CpG: 17/Downstream/8386
Junction sequence
AAGGTGGATC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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