Basic Information
VIS ID
TVIS30013911
Fusion event
HIV-RERE integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.23
Reference genome
GRCh37/hg19
Start
8448583/8388523 (Hg38)
End
8448583/8388523 (Hg38)
Orient
+
Location type
Exonic
Fragile sites / regions
FRA1A
Target gene
RERE
miRNAs that regulate target gene
hsa-mir-200b-3p ; hsa-mir-429 ; hsa-mir-92b-3p ; hsa-mir-301a-3p ; hsa-mir-320a ; hsa-mir-4681 ; hsa-mir-4722-3p ; hsa-mir-4763-5p ; hsa-mir-4769-3p ; hsa-mir-596 ; hsa-mir-6501-3p ; hsa-mir-6727-3p ; hsa-mir-6817-5p
Nearest miRNA
hsa-mir-12136/Upstream/1958627; hsa-mir-101-1/Downstream/477979;
Nearest TSS
ENST00000473358/Upstream/23685; ENST00000444276/Downstream/34896;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/30033, chr1-CpG: 100/Downstream/34806
Nearest cancer related gene
RERE(OG, No orient, 0)
Junction sequence
AAGGTGTTCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
Curate