Basic Information
VIS ID
TVIS30013915
Fusion event
HIV-DAG1 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
49555405/49517972 (Hg38)
End
49555405/49517972 (Hg38)
Orient
+
Location type
Intronic
Target gene
DAG1
miRNAs that regulate target gene
hsa-mir-29a-3p ; hsa-mir-155-5p ; hsa-mir-30a-5p ; hsa-mir-1229-3p ; hsa-mir-423-5p ; hsa-mir-18a-3p ; hsa-mir-222-3p ; hsa-mir-3676-3p ; hsa-mir-142-3p
Nearest miRNA
hsa-mir-12127/Upstream/243786; hsa-let-7g/Downstream/288165;
Nearest TSS
ENST00000440867/Upstream/7748; ENST00000467456/Downstream/36368;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/47115, chr3-CpG: 39/Downstream/21842
Nearby gene
BSN-DT(No orient, 6338)
Junction sequence
AAGGTTACAC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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