Basic Information
VIS ID
TVIS30013916
Fusion event
HIV-SDHAP2 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
196900300/197173429 (Hg38)
End
196900300/197173429 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
SDHAP2
Nearest miRNA
hsa-let-7g/Upstream/1291034; hsa-mir-4797/Downstream/120449;
Nearest TSS
ENST00000440867/Upstream/30630; ENST00000414529/Downstream/10205;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/142926, chr3-CpG: 115/Downstream/124127
Junction sequence
AAGGTAGAGG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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