Basic Information
VIS ID
TVIS30013917
Fusion event
HIV-FAM114A1 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
38598772/38597151 (Hg38)
End
38598772/38597151 (Hg38)
Location type
Intronic
Target gene
FAM114A1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-335-3p ; hsa-mir-6077 ; hsa-mir-5096 ; hsa-mir-7-5p ; hsa-mir-490-5p ; hsa-mir-192-3p ; hsa-mir-106a-3p ; hsa-mir-425-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p
Nearest miRNA
hsa-mir-12113/Upstream/1355160; hsa-mir-1243/Downstream/270881;
Nearest TSS
ENST00000502981/Upstream/33148; ENST00000482150/Downstream/22286;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/582331, chr4-CpG: 164/Downstream/65877
Junction sequence
AAGGTATATG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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