Basic Information
VIS ID
TVIS30013919
Fusion event
HIV-ERAP1 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q15
Reference genome
GRCh37/hg19
Start
96138657/96802954 (Hg38)
End
96138657/96802954 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5B
Target gene
ERAP1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-20b-5p
Nearest miRNA
hsa-mir-10397/Upstream/723742; hsa-mir-103a-1/Downstream/4013528;
Nearest TSS
ENST00000502646/Upstream/9283; ENST00000606656/Downstream/1399;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/99774, chr5-CpG: 90/Downstream/4445
Junction sequence
AAGGTTATTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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