Basic Information
VIS ID
TVIS30013920
Fusion event
HIV-SLC12A2 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
127483562/128147870 (Hg38)
End
127483562/128147870 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC12A2
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-30a-5p ; hsa-let-7c-5p ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-4719 ; hsa-mir-6504-3p ; hsa-mir-5011-5p ; hsa-mir-5580-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-935
Nearest miRNA
hsa-mir-10397/Upstream/8993154; hsa-mir-103a-1/Downstream/949818;
Nearest TSS
ENST00000502646/Upstream/64022; ENST00000504416/Downstream/10118;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/63050, chr5-CpG: 21/Downstream/388395
Junction sequence
AAGGTTATGT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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