Basic Information
VIS ID
TVIS30013921
Fusion event
HIV-FARS2 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
5606278/5606045 (Hg38)
End
5606278/5606045 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6B
Target gene
FARS2
Nearest miRNA
hsa-mir-3691/Upstream/457723; hsa-mir-10398/Downstream/563259;
Nearest TSS
ENST00000381078/Upstream/147970; ENST00000454882/Downstream/89227;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/344343, chr6-CpG: 29/Downstream/245332
Junction sequence
AAGGTAATTG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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