Basic Information
VIS ID
TVIS30013924
Fusion event
HIV-chr6 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
135520570/135199432 (Hg38)
End
135520570/135199432 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378011 ; MYB
miRNAs that regulate target gene
hsa-mir-15a-5p ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-34b-5p ; hsa-mir-150-5p ; hsa-mir-107 ; hsa-mir-16-5p ; hsa-mir-155-5p ; hsa-mir-424-5p ; hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-198 ; hsa-mir-192-5p ; hsa-mir-423-3p ; hsa-mir-200a-3p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-150-3p ; hsa-mir-103a-3p ; hsa-mir-195-5p ; hsa-mir-105-5p ; hsa-mir-106a-5p ; hsa-mir-503-5p
Nearest miRNA
hsa-mir-10398/Upstream/220000; hsa-mir-1202/Downstream/39728;
Nearest TSS
ENST00000381078/Upstream/3437; ENST00000529297/Downstream/3785;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/16159, chr6-CpG: 84/Downstream/297931
Nearby gene
MYB(No orient, 23576)
Nearest cancer related gene
MYB(OG, No orient, 0)
Junction sequence
AAGGTGATCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
Curate