Basic Information
VIS ID
TVIS30013925
Fusion event
HIV-PRKAR2B integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
106511329/106870884 (Hg38)
End
106511329/106870884 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
PRKAR2B
miRNAs that regulate target gene
hsa-mir-590-3p
Nearest miRNA
hsa-mir-10525/Upstream/4399353; hsa-mir-10399/Downstream/7782461;
Nearest TSS
ENST00000635602/Upstream/5405; ENST00000466738/Downstream/11280;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/2596, chr7-CpG: 102/Downstream/173484
Junction sequence
AAGGTAATAT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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