Basic Information
VIS ID
TVIS30013928
Fusion event
HIV-SBF2-AS1 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
9779886/9758339 (Hg38)
End
9779886/9758339 (Hg38)
Location type
ncRNA_intronic
Target gene
SBF2-AS1
Nearest miRNA
hsa-mir-210/Upstream/667960; hsa-let-7a-2/Downstream/749931;
Nearest TSS
ENST00000527297/Upstream/43; ENST00000526617/Downstream/1194;
Nearest CpG islands
chr11-CpG: 72/Target, None/Upstream, None/Downstream
Junction sequence
AAGGTAAAAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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