Basic Information
VIS ID
TVIS30013929
Fusion event
HIV-ARL2-SNX15 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
64543661/64776189 (Hg38)
End
64543661/64776189 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA11H
Target gene
ARL2-SNX15
Nearest miRNA
hsa-mir-1237/Upstream/407486; hsa-let-7a-2/Downstream/102334;
Nearest TSS
ENST00000527297/Upstream/4582; ENST00000594089/Downstream/1571;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/9898, chr11-CpG: 138/Downstream/1458
Junction sequence
AAGGTCACAG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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