Basic Information
VIS ID
TVIS30013930
Fusion event
HIV-ARAP1 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
GRCh37/hg19
Start
72131563/72420519 (Hg38)
End
72131563/72420519 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
ARAP1
miRNAs that regulate target gene
hsa-mir-18a-3p ; hsa-mir-484 ; hsa-mir-3157-3p ; hsa-mir-874-3p ; hsa-mir-6886-3p ; hsa-mir-938 ; hsa-mir-4267 ; hsa-mir-4323
Nearest miRNA
hsa-mir-10392/Upstream/348217; hsa-let-7a-2/Downstream/194544;
Nearest TSS
ENST00000527297/Upstream/9803; ENST00000450804/Downstream/9902;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/175870, chr11-CpG: 42/Downstream/13592
Junction sequence
AAGGTATTAT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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