Basic Information
VIS ID
TVIS30013933
Fusion event
HIV-SEZ6L2 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
29809570/29798249 (Hg38)
End
29809570/29798249 (Hg38)
Orient
-
Location type
Intronic
Target gene
SEZ6L2
Nearest miRNA
hsa-mir-1225/Upstream/198984; hsa-mir-11401/Downstream/705670;
Nearest TSS
ENST00000527434/Upstream/1261; ENST00000563263/Downstream/904;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/7252, chr16-CpG: 267/Downstream/6677
Junction sequence
AAGGTGAGAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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