Basic Information
VIS ID
TVIS30013935
Fusion event
HIV-SGSM2 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
2228660/2325366 (Hg38)
End
2228660/2325366 (Hg38)
Orient
+
Location type
Intronic
Target gene
SGSM2
miRNAs that regulate target gene
hsa-mir-6510-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6888-3p ; hsa-mir-8085 ; hsa-mir-6878-5p ; hsa-mir-6731-5p ; hsa-mir-661 ; hsa-mir-4522 ; hsa-mir-4524a-3p ; hsa-mir-3120-5p ; hsa-mir-3192-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-3664-5p ; hsa-mir-1827 ; hsa-mir-34b-3p ; hsa-mir-3612 ; hsa-mir-3614-5p ; hsa-mir-363-5p ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4443 ; hsa-mir-4478 ; hsa-mir-4532 ; hsa-mir-4649-3p ; hsa-mir-4651 ; hsa-mir-608 ; hsa-mir-6500-3p ; hsa-mir-650 ; hsa-mir-665 ; hsa-mir-6745 ; hsa-mir-6752-5p ; hsa-mir-6808-5p ; hsa-mir-6842-5p ; hsa-mir-6880-5p ; hsa-mir-6893-5p ; hsa-mir-7110-5p ; hsa-mir-7160-5p ; hsa-mir-7847-3p ; hsa-mir-940
Nearest miRNA
hsa-mir-132/Upstream/274986; hsa-mir-10226/Downstream/367495;
Nearest TSS
ENST00000595228/Upstream/9988; ENST00000572875/Downstream/5600;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/21281, chr17-CpG: 178/Downstream/10970
Junction sequence
AAGGTGTCAG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
Curate