Basic Information
VIS ID
TVIS30013939
Fusion event
HIV-CYTH1 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
74215223/76219142 (Hg38)
End
74215223/76219142 (Hg38)
Orient
+
Location type
Intronic
Target gene
CYTH1
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-34a-5p ; hsa-mir-1827 ; hsa-mir-3940-3p
Nearest miRNA
hsa-mir-10226/Upstream/121066; hsa-mir-1250/Downstream/517308;
Nearest TSS
ENST00000595228/Upstream/52060; ENST00000587913/Downstream/21159;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/77421, chr17-CpG: 17/Downstream/7657
Junction sequence
AAGGTCACTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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