Basic Information
VIS ID
TVIS30013941
Fusion event
HIV-ICAM3 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
10448206/10337530 (Hg38)
End
10448206/10337530 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
ICAM3
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-4258 ; hsa-mir-3943
Nearest miRNA
hsa-mir-1227/Upstream/107045; hsa-let-7e/Downstream/65928;
Nearest TSS
ENST00000633603/Upstream/1757; ENST00000586275/Downstream/2089;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/2184, chr19-CpG: 58/Downstream/15420
Nearby gene
PDE4A(No orient, 6899)
Junction sequence
AAAGTGATCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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