Basic Information
VIS ID
TVIS30013943
Fusion event
HIV-ZBTB32 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
36197331/35706429 (Hg38)
End
36197331/35706429 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZBTB32
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10395/Upstream/360802; hsa-let-7e/Downstream/3703194;
Nearest TSS
ENST00000633603/Upstream/1850; ENST00000262630/Downstream/6499;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1856, chr19-CpG: 245/Downstream/9941
Junction sequence
AAGGTGGGTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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