Basic Information
VIS ID
TVIS30013944
Fusion event
HIV-ZNF649 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
57087504/56576136 (Hg38)
End
57087504/56576136 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF649
miRNAs that regulate target gene
hsa-mir-2355-5p ; hsa-mir-4313 ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-6887-3p ; hsa-mir-618
Nearest miRNA
hsa-let-7e/Upstream/1187894; hsa-mir-10394/Downstream/1758552;
Nearest TSS
ENST00000633603/Upstream/1489; ENST00000601579/Downstream/10499;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/8204, chr19-CpG: 41/Downstream/19071
Junction sequence
AAGGTGAGTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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