Basic Information
VIS ID
TVIS30013945
Fusion event
HIV-RPS19BP1 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
38258269/37862262 (Hg38)
End
38258269/37862262 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
RPS19BP1
miRNAs that regulate target gene
hsa-mir-7-5p
Nearest miRNA
hsa-mir-1286/Upstream/14488; hsa-let-7a-3/Downstream/105301;
Nearest TSS
ENST00000624155/Upstream/3697; ENST00000482600/Downstream/7903;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/12588, chr22-CpG: 98/Downstream/43685
Junction sequence
AAGGTTAGTG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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