Basic Information
VIS ID
TVIS30013946
Fusion event
HIV-KIAA0319L integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
35950701/35485100 (Hg38)
End
35950701/35485100 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIAA0319L
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-128-3p ; hsa-mir-423-3p ; hsa-mir-432-5p ; hsa-mir-218-5p ; hsa-mir-5689 ; hsa-mir-571 ; hsa-mir-219a-1-3p ; hsa-mir-129-5p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-431-5p ; hsa-mir-4294 ; hsa-mir-3194-3p ; hsa-mir-924
Nearest miRNA
hsa-mir-12136/Upstream/815406; hsa-mir-101-1/Downstream/1676463;
Nearest TSS
ENST00000473358/Upstream/14194; ENST00000459931/Downstream/21767;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/215846, chr1-CpG: 95/Downstream/71979
Nearby gene
C1orf216(No orient, 1363)
Junction sequence
AAGGTCCAAC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
Curate