Basic Information
VIS ID
TVIS30013950
Fusion event
HIV-chr9 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q32
Reference genome
GRCh37/hg19
Start
117478696/114716416 (Hg38)
End
117478696/114716416 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA9E
Nearest miRNA
hsa-let-7a-1/Upstream/506887; hsa-mir-12126/Downstream/5528563;
Nearest TSS
ENST00000422679/Upstream/34350; ENST00000477580/Downstream/75692;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/104620, chr9-CpG: 77/Downstream/1437667
Nearby gene
LINC00474(No orient, 211669)
Junction sequence
AAGGTTACCG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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