Basic Information
VIS ID
TVIS30013951
Fusion event
HIV-KIAA0355 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
34843246/34352341 (Hg38)
End
34843246/34352341 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
KIAA0355
miRNAs that regulate target gene
hsa-mir-20a-3p ; hsa-mir-149-5p ; hsa-let-7e-5p ; hsa-mir-3687 ; hsa-mir-3157-3p ; hsa-mir-8075 ; hsa-mir-18b-3p ; hsa-mir-4708-3p ; hsa-mir-93-3p ; hsa-mir-451b ; hsa-mir-124-3p ; hsa-mir-6893-3p ; hsa-mir-370-3p
Nearest miRNA
hsa-mir-10395/Upstream/13952987; hsa-let-7e/Downstream/770359;
Nearest TSS
ENST00000633603/Upstream/3879; ENST00000587521/Downstream/7071;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/97042, chr19-CpG: 56/Downstream/6825
Nearby gene
PLEKHF1(No orient, 4921)
Junction sequence
AAGCTGCAGT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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