Basic Information
VIS ID
TVIS30013953
Fusion event
HIV-LOC102724608 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50979893/50541464 (Hg38)
End
50979893/50541464 (Hg38)
Location type
Intronic
Target gene
LOC102724608
Nearest miRNA
hsa-let-7a-3/Upstream/133940;
Nearest TSS
ENST00000624155/Upstream/8884; ENST00000609268/Downstream/1186;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/9125, chr22-CpG: 47/Downstream/2677
Junction sequence
AAGGTCATGA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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