Basic Information
VIS ID
TVIS30013954
Fusion event
HIV-chrX integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.3
Reference genome
GRCh37/hg19
Start
42941055/43081806 (Hg38)
End
42941055/43081806 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1587/Upstream/3244193; hsa-let-7f-2/Downstream/2664351;
Nearest TSS
ENST00000429181/Upstream/303559; ENST00000440955/Downstream/95188;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/303550, chrX-CpG: 54/Downstream/572976
Nearby gene
PPP1R2C(No orient, 418625)
Junction sequence
AAGGTCTAAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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