VISDB Viral Integration Site DataBase

VIS ID

TVIS30013958

Fusion event

HIV-SLC38A9 integration

Validated

Yes

Detection method

invPCR+RT-PCR

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2004

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q11.2

Reference genome

Start

End

54961734/55665906 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-3194-5p ; hsa-mir-4755-3p ; hsa-mir-3607-3p ; hsa-mir-1972 ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-8086 ; hsa-mir-4474-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-4775 ; hsa-mir-4778-3p ; hsa-mir-24-2-5p ; hsa-mir-24-1-5p ; hsa-mir-1911-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-145-3p ; hsa-mir-488-5p ; hsa-mir-4661-3p ; hsa-mir-129-5p ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-8063 ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-551b-5p ; hsa-mir-3675-3p ; hsa-mir-605-5p ; hsa-mir-106a-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-564 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-4695-3p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-183-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-5197-5p ; hsa-mir-1264 ; hsa-mir-330-3p ; hsa-mir-3654 ; hsa-mir-4520-3p ; hsa-mir-4638-3p ; hsa-mir-519d-5p ; hsa-mir-6835-3p

Nearest miRNA

hsa-mir-10397/Upstream/156980; hsa-mir-103a-1/Downstream/2864137;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/130614, chr5-CpG: 48/Downstream/46102

Junction sequence