Basic Information
VIS ID
TVIS30013959
Fusion event
HIV-LRRC37A integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
41727533/43650165 (Hg38)
End
41727533/43650165 (Hg38)
Orient
-
Location type
upstream
Target gene
LRRC37A
Nearest miRNA
hsa-mir-1180/Upstream/205280; hsa-mir-10226/Downstream/557606;
Nearest TSS
ENST00000595228/Upstream/70545; ENST00000593169/Downstream/11398;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/3707, chr17-CpG: 41/Downstream/63577
Junction sequence
AAGGTGGTTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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