Basic Information
VIS ID
TVIS30013960
Fusion event
HIV-chr5 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
121405775/122070080 (Hg38)
End
121405775/122070080 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOX ; SRFBP1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-29c-3p ; hsa-mir-767-5p ; hsa-mir-200b-3p ; hsa-mir-4743-3p ; hsa-mir-3591-5p ; hsa-mir-511-5p ; hsa-mir-6888-3p ; hsa-mir-142-3p ; hsa-mir-6830-3p ; hsa-mir-3120-5p ; hsa-mir-4280 ; hsa-mir-548e-5p ; hsa-mir-2054 ; hsa-mir-8068 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-302f ; hsa-mir-8066 ; hsa-mir-5692a ; hsa-mir-4668-5p ; hsa-mir-3613-3p ; hsa-mir-4735-5p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-7109-3p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4524a-3p ; hsa-mir-1-5p ; hsa-mir-3664-5p ; hsa-mir-514a-5p ; hsa-mir-4714-5p ; hsa-mir-30a-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-4470 ; hsa-mir-4517 ; hsa-mir-5583-3p ; hsa-mir-889-3p ; hsa-mir-9-5p ; hsa-mir-96-5p
Nearest miRNA
hsa-mir-10397/Upstream/2915364; hsa-mir-103a-1/Downstream/7027608;
Nearest TSS
ENST00000502646/Upstream/49550; ENST00000505843/Downstream/6003;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/107880, chr5-CpG: 137/Downstream/6725
Nearby gene
SRFBP1(No orient, 13581)
Nearest cancer related gene
LOX(TSG, No orient, 0)
Junction sequence
AAGGTGCATA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
Curate