Basic Information
VIS ID
TVIS30013961
Fusion event
HIV-chr1 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
198958076/198988947 (Hg38)
End
198958076/198988947 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/129794; hsa-mir-1182/Downstream/2730561;
Nearest TSS
ENST00000473358/Upstream/5323; ENST00000432488/Downstream/27186;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/829713, chr1-CpG: 36/Downstream/1046399
Nearby gene
CAMSAP2(No orient, 17233)
Junction sequence
AAGGTCAGAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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