Basic Information
VIS ID
TVIS30013962
Fusion event
HIV-PARP11 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
GRCh37/hg19
Start
3955731/3846565 (Hg38)
End
3955731/3846565 (Hg38)
Orient
-
Location type
Intronic
Target gene
PARP11
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-122-5p ; hsa-mir-7-5p ; hsa-mir-26b-5p ; hsa-mir-1273e ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6799-5p ; hsa-mir-31-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6134 ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-1247-3p ; hsa-mir-3123 ; hsa-mir-302f ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-765 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4779 ; hsa-mir-374a-3p ; hsa-mir-421 ; hsa-mir-4709-5p ; hsa-mir-136-3p ; hsa-mir-212-3p ; hsa-mir-132-3p
Nearest miRNA
hsa-mir-3649/Upstream/2186185; hsa-let-7i/Downstream/3117134;
Nearest TSS
ENST00000382841/Upstream/24591; ENST00000545163/Downstream/25169;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/7111, chr12-CpG: 38/Downstream/26515
Nearby gene
PARP11(No orient, 102862)
Junction sequence
AAGGTCGATT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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