Basic Information
VIS ID
TVIS30013963
Fusion event
HIV-GATAD2B integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
153866184/153893708 (Hg38)
End
153866184/153893708 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
GATAD2B
miRNAs that regulate target gene
hsa-mir-590-3p ; hsa-mir-181a-5p ; hsa-mir-32-5p ; hsa-mir-30a-5p ; hsa-mir-744-5p ; hsa-mir-505-5p ; hsa-mir-221-5p ; hsa-mir-766-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-mir-365a-3p ; hsa-mir-186-5p ; hsa-mir-221-3p ; hsa-let-7c-5p ; hsa-mir-1260b ; hsa-mir-25-3p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-338-5p ; hsa-mir-92b-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-1199-5p ; hsa-mir-6751-3p ; hsa-mir-4760-3p ; hsa-mir-6832-3p ; hsa-mir-642a-5p ; hsa-mir-3120-3p ; hsa-mir-4469 ; hsa-mir-6892-3p ; hsa-mir-335-3p ; hsa-mir-2276-5p ; hsa-mir-4468 ; hsa-mir-3915 ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-765 ; hsa-mir-4533 ; hsa-mir-7-5p ; hsa-mir-3928-3p ; hsa-mir-6876-5p ; hsa-mir-4779 ; hsa-mir-4476 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-6824-5p ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-29a-5p ; hsa-mir-4293 ; hsa-mir-6783-5p ; hsa-mir-6792-3p ; hsa-mir-6075 ; hsa-mir-3162-3p ; hsa-mir-6865-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-329-5p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-513b-5p ; hsa-mir-3119 ; hsa-mir-6069 ; hsa-mir-7151-5p ; hsa-mir-3158-3p ; hsa-mir-4446-3p ; hsa-mir-5088-5p ; hsa-mir-589-3p ; hsa-mir-4713-5p ; hsa-mir-1260a ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-6887-3p ; hsa-mir-1224-3p ; hsa-mir-1255b-2-3p
Nearest miRNA
hsa-mir-101-1/Upstream/203915; hsa-mir-1182/Downstream/68643;
Nearest TSS
ENST00000473358/Upstream/66098; ENST00000641267/Downstream/5243;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/109849, chr1-CpG: 48/Downstream/28653
Nearby gene
MSTO1(No orient, 14802)
Junction sequence
AAGGTCTAAT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
Curate