Basic Information
VIS ID
TVIS30013966
Fusion event
HIV-chr12 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q22
Reference genome
GRCh37/hg19
Start
92795962/92402186 (Hg38)
End
92795962/92402186 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA12B
Nearest miRNA
hsa-let-7i/Upstream/5657037; hsa-mir-1178/Downstream/2159603;
Nearest TSS
ENST00000382841/Upstream/38354; ENST00000508671/Downstream/19345;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/255629, chr12-CpG: 133/Downstream/526380
Nearby gene
CRADD(No orient, 27300)
Junction sequence
AAGGTAATGG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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