Basic Information
VIS ID
TVIS30013967
Fusion event
HIV-RNF111 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
59374497/59082298 (Hg38)
End
59374497/59082298 (Hg38)
Orient
-
Location type
Intronic
Target gene
RNF111
miRNAs that regulate target gene
hsa-mir-186-5p ; hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-mir-484 ; hsa-mir-21-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6716-5p ; hsa-mir-31-5p ; hsa-mir-4533 ; hsa-mir-3616-3p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-5002-3p ; hsa-mir-17-3p ; hsa-mir-4712-3p ; hsa-mir-624-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-2392 ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-6873-5p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-6753-5p ; hsa-mir-1911-3p ; hsa-mir-548aw ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-545-5p ; hsa-mir-3662 ; hsa-mir-101-3p ; hsa-mir-144-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-153-5p ; hsa-mir-19a-3p
Nearest miRNA
hsa-mir-10393/Upstream/3709264; hsa-mir-11181/Downstream/88885;
Nearest TSS
ENST00000557528/Upstream/1354; ENST00000559077/Downstream/1642;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/93777, chr15-CpG: 49/Downstream/22773
Nearby gene
RORA(No orient, 65703)
Nearest cancer related gene
RNF111(TSG, No orient, 0)
Junction sequence
AAGGTCACTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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