Basic Information
VIS ID
TVIS30013968
Fusion event
HIV-RPL11 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
23891195/23564705 (Hg38)
End
23891195/23564705 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
RPL11
miRNAs that regulate target gene
hsa-mir-505-5p ; hsa-mir-92a-3p ; hsa-mir-150-3p
Nearest miRNA
hsa-mir-12136/Upstream/520333; hsa-mir-101-1/Downstream/364365;
Nearest TSS
ENST00000473358/Upstream/4911; ENST00000612756/Downstream/16790;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/4984, chr1-CpG: 66/Downstream/3308
Nearest cancer related gene
RPL11(TSG, No orient, 0)
Junction sequence
AAGGTATGAG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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