Basic Information
VIS ID
TVIS30013969
Fusion event
HIV-RAVER2 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
64987369/64521686 (Hg38)
End
64987369/64521686 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
RAVER2
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-let-7a-5p ; hsa-mir-99a-5p ; hsa-mir-99b-5p ; hsa-mir-615-3p ; hsa-mir-149-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-197-3p ; hsa-mir-4684-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-3124-3p ; hsa-mir-367-5p ; hsa-mir-1267
Nearest miRNA
hsa-mir-12132/Upstream/1194702; hsa-mir-101-1/Downstream/58161;
Nearest TSS
ENST00000473358/Upstream/15771; ENST00000486580/Downstream/41991;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/15765, chr1-CpG: 95/Downstream/222913
Junction sequence
AAGGTCTATA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
Curate