Basic Information
VIS ID
TVIS30013973
Fusion event
HIV-AMN1 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
31857504/31704570 (Hg38)
End
31857504/31704570 (Hg38)
Orient
-
Location type
Intronic
Target gene
AMN1
Nearest miRNA
hsa-mir-1244-3/Upstream/5830491; hsa-let-7i/Downstream/10619130;
Nearest TSS
ENST00000382841/Upstream/42633; ENST00000619086/Downstream/10381;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/45113, chr12-CpG: 51/Downstream/24421
Nearby gene
H3F3C(No orient, 21062)
Junction sequence
AAGGTCAAAG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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