Basic Information
VIS ID
TVIS30013975
Fusion event
HIV-CCT3 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
154557904/154585428 (Hg38)
End
154557904/154585428 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
CCT3
miRNAs that regulate target gene
hsa-mir-151a-5p ; hsa-mir-124-3p ; hsa-mir-183-5p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-1301-3p ; hsa-mir-320b ; hsa-mir-330-5p ; hsa-mir-320a ; hsa-mir-221-3p ; hsa-mir-34a-5p
Nearest miRNA
hsa-mir-101-1/Upstream/391685; hsa-mir-1182/Downstream/390265;
Nearest TSS
ENST00000473358/Upstream/10; ENST00000604546/Downstream/2852;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/13191, chr1-CpG: 48/Downstream/22476
Junction sequence
AAGGTTCTCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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