VISDB Viral Integration Site DataBase

VIS ID

TVIS30013976

Fusion event

HIV-FOSL2 integration

Validated

Yes

Detection method

invPCR+RT-PCR

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2004

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p23.2

Reference genome

Start

End

28469242/28246375 (Hg38)

Orient

+

Location type

upstream

Target gene

miRNAs that regulate target gene

hsa-mir-342-3p ; hsa-mir-99a-5p ; hsa-mir-6748-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-3665 ; hsa-mir-1252-5p ; hsa-mir-550b-2-5p ; hsa-mir-7703 ; hsa-mir-6807-5p ; hsa-mir-6743-3p ; hsa-mir-4793-3p ; hsa-mir-566 ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-6811-3p ; hsa-mir-8075 ; hsa-mir-214-5p ; hsa-mir-4679 ; hsa-mir-383-3p ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4649-3p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-133a-3p ; hsa-mir-4684-5p ; hsa-mir-4281 ; hsa-mir-520f-5p ; hsa-mir-4521 ; hsa-mir-6793-3p ; hsa-mir-6816-3p ; hsa-mir-5571-5p ; hsa-mir-133b ; hsa-mir-6513-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6847-3p ; hsa-mir-4786-5p ; hsa-mir-4761-5p ; hsa-mir-548s ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-6849-3p ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-590-3p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-1247-3p ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-6086 ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-153-5p ; hsa-mir-7151-5p

Nearest miRNA

hsa-mir-1301/Upstream/249926; hsa-mir-10b/Downstream/4285778;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/355478, chr2-CpG: 302/Downstream/143722

Junction sequence