Basic Information
VIS ID
TVIS30013977
Fusion event
HIV-SNED1 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
241651834/240712417 (Hg38)
End
241651834/240712417 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2J
Target gene
SNED1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-4666b ; hsa-mir-5011-3p ; hsa-mir-4775 ; hsa-mir-506-3p ; hsa-mir-124-3p ; hsa-mir-6815-3p ; hsa-mir-103a-2-5p ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-590-3p ; hsa-mir-4753-5p
Nearest miRNA
hsa-mir-10b/Upstream/256328; hsa-mir-3133/Downstream/765488;
Nearest TSS
ENST00000437798/Upstream/15442; ENST00000472436/Downstream/7868;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/10475, chr2-CpG: 88/Downstream/65205
Junction sequence
AAGGTGAGTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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