Basic Information
VIS ID
TVIS30013978
Fusion event
HIV-AKAP13 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
86189926/85646695 (Hg38)
End
86189926/85646695 (Hg38)
Orient
-
Location type
Intronic
Target gene
AKAP13
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-423-5p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-149-5p ; hsa-mir-16-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-8074 ; hsa-mir-6778-3p ; hsa-mir-4287 ; hsa-mir-4685-3p ; hsa-mir-1281 ; hsa-mir-3667-3p ; hsa-mir-6832-3p ; hsa-mir-183-5p
Nearest miRNA
hsa-mir-10393/Upstream/266033; hsa-mir-11181/Downstream/123801;
Nearest TSS
ENST00000557528/Upstream/776; ENST00000558092/Downstream/24253;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/265246, chr15-CpG: 20/Downstream/112023
Nearby gene
NTRK3(No orient, 31066)
Nearest cancer related gene
AKAP13(OG, No orient, 0)
Junction sequence
AAGGTTATAG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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