Basic Information
VIS ID
TVIS30013979
Fusion event
HIV-SPN integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
29681519/29670198 (Hg38)
End
29681519/29670198 (Hg38)
Orient
+
Location type
Intronic
Target gene
SPN
miRNAs that regulate target gene
hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-5589-3p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-6818-5p ; hsa-mir-337-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-4707-3p ; hsa-mir-519e-3p ; hsa-mir-515-3p ; hsa-mir-33b-3p ; hsa-mir-371a-3p ; hsa-mir-371b-3p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-6749-3p ; hsa-mir-7113-3p ; hsa-mir-3194-3p ; hsa-mir-510-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7159-5p ; hsa-mir-877-3p ; hsa-mir-3065-5p ; hsa-mir-4666b ; hsa-mir-6750-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-5001-3p ; hsa-mir-335-3p ; hsa-mir-5007-3p ; hsa-mir-4775 ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-4735-5p ; hsa-mir-1279 ; hsa-mir-6765-3p ; hsa-mir-590-3p
Nearest miRNA
hsa-mir-1225/Upstream/70933; hsa-mir-11401/Downstream/833721;
Nearest TSS
ENST00000527434/Upstream/1756; ENST00000562473/Downstream/8810;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/5399, chr16-CpG: 21/Downstream/24679
Nearby gene
ZG16(No orient, 15543)
Junction sequence
AAGGTTTTTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
Curate