Basic Information
VIS ID
TVIS30013980
Fusion event
HIV-USP36 integration
Validated
Yes
Detection method
invPCR+RT-PCR
Data source
download(RID)
Sample type
T cell
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2004
PubMed ID
15163705
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
74341831/76345750 (Hg38)
End
74341831/76345750 (Hg38)
Orient
+
Location type
Intronic
Target gene
USP36
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-342-5p ; hsa-mir-615-3p ; hsa-mir-151a-3p ; hsa-mir-4531 ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-6077 ; hsa-mir-6124 ; hsa-mir-873-3p ; hsa-mir-6770-5p ; hsa-mir-7515 ; hsa-mir-6080 ; hsa-mir-6840-3p ; hsa-mir-101-5p ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-329-5p ; hsa-mir-4499 ; hsa-mir-9500 ; hsa-mir-3154
Nearest miRNA
hsa-mir-10226/Upstream/247674; hsa-mir-1250/Downstream/390700;
Nearest TSS
ENST00000595228/Upstream/15449; ENST00000591651/Downstream/7702;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/37403, chr17-CpG: 128/Downstream/7320
Junction sequence
AAGGTGAAGG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Han, Y., et al. Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes. J Virol ,2004,78(12): 6122-6133.
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