VISDB Viral Integration Site DataBase

VIS ID

TVIS30013983

Fusion event

HIV-CBX6 integration

Validated

Yes

Detection method

invPCR+RT-PCR

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2004

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q12.3

Reference genome

Start

End

37591227/37195187 (Hg38)

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-874-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-328-3p ; hsa-mir-182-5p ; hsa-mir-92a-3p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-3978 ; hsa-mir-6071 ; hsa-mir-6828-3p ; hsa-mir-4423-3p ; hsa-mir-8071 ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-4641 ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-3688-3p ; hsa-mir-4694-3p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-424-5p ; hsa-mir-6083 ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-664a-3p ; hsa-mir-5011-5p ; hsa-mir-4760-3p ; hsa-mir-1298-5p ; hsa-mir-3660 ; hsa-mir-5006-5p ; hsa-mir-5682 ; hsa-mir-585-5p ; hsa-mir-4755-3p ; hsa-mir-873-5p ; hsa-mir-539-5p ; hsa-mir-4768-3p ; hsa-mir-3976 ; hsa-mir-6165 ; hsa-mir-6871-3p ; hsa-mir-2278 ; hsa-mir-4523 ; hsa-mir-29c-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-129-5p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6881-3p ; hsa-mir-7111-3p ; hsa-mir-6780a-3p ; hsa-mir-877-3p ; hsa-mir-138-2-3p ; hsa-mir-103a-2-5p ; hsa-mir-1207-5p ; hsa-mir-1233-5p ; hsa-mir-1237-5p ; hsa-mir-1269a ; hsa-mir-1269b ; hsa-mir-128-1-5p ; hsa-mir-128-2-5p ; hsa-mir-1288-3p ; hsa-mir-1321 ; hsa-mir-140-3p ; hsa-mir-149-3p ; hsa-mir-151a-5p ; hsa-mir-151b ; hsa-mir-185-5p ; hsa-mir-1915-3p ; hsa-mir-2276-5p ; hsa-mir-2355-5p ; hsa-mir-3162-5p ; hsa-mir-342-5p ; hsa-mir-361-3p ; hsa-mir-3617-3p ; hsa-mir-3938 ; hsa-mir-4270 ; hsa-mir-4300 ; hsa-mir-4306 ; hsa-mir-4436b-3p ; hsa-mir-4441 ; hsa-mir-4446-3p ; hsa-mir-4488 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4505 ; hsa-mir-4515 ; hsa-mir-451b ; hsa-mir-4632-5p ; hsa-mir-4644 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-4690-3p ; hsa-mir-4691-3p ; hsa-mir-4697-5p ; hsa-mir-4716-3p ; hsa-mir-4721 ; hsa-mir-4723-5p ; hsa-mir-4728-5p ; hsa-mir-4731-5p ; hsa-mir-4739 ; hsa-mir-4740-5p ; hsa-mir-4756-5p ; hsa-mir-4763-3p ; hsa-mir-5001-5p ; hsa-mir-5591-5p ; hsa-mir-5685 ; hsa-mir-5698 ; hsa-mir-5787 ; hsa-mir-608 ; hsa-mir-6090 ; hsa-mir-637 ; hsa-mir-642a-5p ; hsa-mir-6721-5p ; hsa-mir-6726-5p ; hsa-mir-6731-5p ; hsa-mir-6735-5p ; hsa-mir-6737-5p ; hsa-mir-6742-5p ; hsa-mir-6747-5p ; hsa-mir-6754-5p ; hsa-mir-6755-5p ; hsa-mir-6756-5p ; hsa-mir-6758-5p ; hsa-mir-6760-5p ; hsa-mir-6764-5p ; hsa-mir-6766-5p ; hsa-mir-6768-5p ; hsa-mir-6778-5p ; hsa-mir-6785-5p ; hsa-mir-6794-5p ; hsa-mir-6798-5p ; hsa-mir-6809-5p ; hsa-mir-6812-5p ; hsa-mir-6819-5p ; hsa-mir-6825-5p ; hsa-mir-6827-5p ; hsa-mir-6835-3p ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-6856-5p ; hsa-mir-6870-5p ; hsa-mir-6877-5p ; hsa-mir-6879-5p ; hsa-mir-6883-5p ; hsa-mir-6892-3p ; hsa-mir-7111-5p ; hsa-mir-762 ; hsa-mir-7843-5p ; hsa-mir-8085 ; hsa-mir-8485 ; hsa-mir-920 ; hsa-mir-92a-2-5p

Nearest miRNA

hsa-mir-1286/Upstream/908280; hsa-let-7a-3/Downstream/649085;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/12567, chr22-CpG: 92/Downstream/3438

Junction sequence