Basic Information
VIS ID
TVIS30013993
Fusion event
HIV-ZNF90 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
20220649/20109840 (Hg38)
End
20220649/20109840 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF90
miRNAs that regulate target gene
hsa-mir-4762-3p ; hsa-mir-578 ; hsa-mir-526b-5p ; hsa-mir-4766-5p ; hsa-mir-6833-3p ; hsa-mir-6809-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6845-3p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-770-5p ; hsa-mir-4712-5p ; hsa-mir-200b-5p ; hsa-mir-200a-5p
Nearest miRNA
hsa-mir-10395/Upstream/674682; hsa-let-7e/Downstream/289432;
Nearest TSS
ENST00000633603/Upstream/31803; ENST00000484032/Downstream/10984;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/57542, chr19-CpG: 19/Downstream/972518
Upstream sequence
ggtggtgtgcagctgtggtcccagctacatgggagattgaaggggagtcaaaattgtgcctctacactccagcttgggtgacagagtgagactctgtctc
Downstream sequence
caaaaaaaaaagctgtttatttcaggcatgttgttatgcaaaagacttctagaaactttacatcttgcaaaactaaaacttagtacccattaagaaacaa
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate