Basic Information
VIS ID
TVIS30013995
Fusion event
HIV-LINC01891 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
235359898/234451254 (Hg38)
End
235359898/234451254 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01891
Nearest miRNA
hsa-mir-10b/Upstream/1900681; hsa-mir-149/Downstream/3059677;
Nearest TSS
ENST00000437798/Upstream/12926; ENST00000629370/Downstream/3341;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/354742, chr2-CpG: 184/Downstream/44604
Nearby gene
ARL4C(No orient, 41788)
Upstream sequence
CGCCATCATCTGCAACCCCATGTTCATGCCTTCACATTATCTAAGACTTGGGCACCTAATGGCCTTCGGATTTCTAGCTTTTCTTTCCTCAGAAAGGTTC
Downstream sequence
TCCACATGGCCTTTCTTAGGGATGGCCCAGCAGCACCCAGTCTCACAGGGCTGCCTCGGCCTCCAGGTCCTAGCTTTTTGCATCTGCATGCCATTTCAGC
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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