Basic Information
VIS ID
TVIS30014004
Fusion event
HIV-CDC27P1 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
133019626/132262053 (Hg38)
End
133019626/132262053 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
CDC27P1
Nearest miRNA
hsa-mir-1285-2/Upstream/4973; hsa-mir-10b/Downstream/171658;
Nearest TSS
ENST00000437798/Upstream/4084; ENST00000622084/Downstream/32324;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/3886, chr2-CpG: 79/Downstream/90690
Nearby gene
ANKRD30BL(No orient, 4084)
Upstream sequence
AACAGGTTCAAAATAAACCAAAAACTGGTTGAAGTTTATTAGGAGGACCAGCAGCTCTTAGTCCATTAACCCCAAGTTTTGGGATTTTGCCATTAGAAAC
Downstream sequence
CCCAAGTCCTGGAGATGGATCCTATTTACAAAACTACACTAATACACCTTCTGAAATTGATGTGCCATCCACCGGATCCCCTTAAAAAAAGTCTGTTGCC
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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