Basic Information
VIS ID
TVIS30014006
Fusion event
HIV-MRTFB integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.12
Reference genome
End
14325403/14231546 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/1511175; hsa-mir-11401/Downstream/72421;
Nearest cancer related gene
MRTFB(OG, No orient, 0)
Upstream sequence
gtgtcacagggatttgatgtagattcttttgtcacccaggtactaagcccaatactcaatagttattttttctgctcctctccctctttccatcctctac
Downstream sequence
cctcaagtaggccccagtgtgtgttgttcccctctatgtgtccatgtgttctcatcatttagctcccgcttgtgagaacatgcagtatttggttttctgt
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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