Basic Information
VIS ID
TVIS30014011
Fusion event
HIV-UPF3B integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q24
Reference genome
GRCh37/hg19
Start
118943893/119809930 (Hg38)
End
118943893/119809930 (Hg38)
Orient
-
Location type
Intronic
Target gene
UPF3B
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-let-7f-2/Upstream/163082; hsa-mir-105-1/Downstream/1561042;
Nearest TSS
ENST00000429181/Upstream/18287; ENST00000371437/Downstream/28002;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/17764, chrX-CpG: 45/Downstream/42791
Nearby gene
RPL39(No orient, 18271)
Upstream sequence
gctacaatcagagcaaaatgaattctgctaaaattgaaggaacaacaaacgtcaaatttagggtgaggttagggtggaagaatggtaaaatcactgatgc
Downstream sequence
tttaccaaaagtttatggggacaatgcacctaaataaatcagcagtttataaaaatagttaatttgtaagaaaggacaagacgatgctgaagatgaagcc
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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