Basic Information
VIS ID
TVIS30014013
Fusion event
HIV-chr16 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
29455394/29444073 (Hg38)
End
29455394/29444073 (Hg38)
Orient
+
Location type
Intronic
Target gene
BOLA2-SMG1P6 ; SMG1P6
Nearest miRNA
hsa-mir-1225/Upstream/485412; hsa-mir-11401/Downstream/155106;
Nearest TSS
ENST00000527434/Upstream/40044; ENST00000567248/Downstream/10274;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/144983, chr16-CpG: 146/Downstream/9959
Nearby gene
LOC606724(No orient, 5272)
Upstream sequence
ATCAACATCAAAAGACATATGCAAACAGCAATTTAAGACTGGGTTTCTTAAATCTACCAGGAAAGTCTGTGGTGGATTTGACTAGGGGGTGGTTGAAAAG
Downstream sequence
CCAGTCATTTTTGTTTACAAAATATACAGTACTTAATTTATAACTTTATAAATGTGTCAACTTGTTTTACCCTTATGaaaatttaataaatttaataaCA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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