VISDB Viral Integration Site DataBase

VIS ID

TVIS30014022

Fusion event

HIV-AGMAT integration

Validated

Yes

Detection method

invPCR

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2007

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.21

Reference genome

Start

End

15905906/15579411 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-let-7e-5p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-1306-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-5089-5p ; hsa-mir-6878-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-212-5p ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-6813-3p ; hsa-mir-4517 ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-7703 ; hsa-mir-4325 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4504 ; hsa-mir-6776-5p ; hsa-mir-661 ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-548p ; hsa-mir-508-5p

Nearest miRNA

hsa-mir-12136/Upstream/3000388; hsa-mir-101-1/Downstream/1279538;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/52243, chr1-CpG: 62/Downstream/5182

Upstream sequence

AGAGACAGGATGAGAATCAAGGGTGGTGGCACAGGGGAGCTTGGCTGAAGGCTTAACTAAACCAAGACACACCCTTTCTCCAACCGAGGAAgaggaagct

Downstream sequence

ttaatccagctctctccataacctccatcaacccctgccagccacccaaaataaacatctgatccaaatccgtgaggaataaatgcagctttgagcaaag